Genetics of Subpolar Fish and Invertebrates

Table of Contents

Chapter

Page

Acknowledgments

ix

Introduction to genetics of subpolar fish and invertebrates

A.J. Gharrett, S. Keller, R.G. Gustafson, P. Johnson, J.L. Nielsen, J.E. Seeb, L.W. Seeb, W.W. Smoker, G.H. Thorgaard, and R.L. Wilmot

1

Keynote address—
Using haplotype trees for phylogeographic and species inference in fish populations

A.R. Templeton

7

Genetics of populations: Freshwater and anadromous species

Migration of Pacific Rim chum salmon on the high seas: Insights from genetic data

L.W. Seeb, P.A. Crane, C.M. Kondzela, R.L. Wilmot, S. Urawa, N.V. Varnavskaya, and J.E. Seeb

21

Genetic population structure of chum salmon in the Pacific Rim inferred from mitochondrial DNA sequence variation

S. Sato, H. Kojima, J. Ando, H. Ando, R.L. Wilmot, L.W. Seeb, V. Efremov, L. LeClair, W. Buchholz, D-H. Jin, S. Urawa, M. Kaeriyama, A. Urano, and S. Abe

37

Smaller effective population sizes evidenced by loss of microsatellite alleles in tributary-spawning populations of sockeye salmon from the Kvichak River, Alaska drainage

C. Habicht, J.B. Olsen, L. Fair, and J.E. Seeb

51

Microsatellite DNA data indicate distinct native populations of kokanee (Oncorhynchus nerka) persist in the Lake Sammamish basin, Washington

S.F. Young, M.R. Downen, and J.B. Shaklee

63

Genetic structure of wild chinook salmon populations of Southeast Alaska and northern British Columbia

C.M. Guthrie III and R.L. Wilmot

81

Population structure and stock identification of steelhead trout (Oncorhynchus mykiss) in British Columbia and the Columbia River based on microsatellite variation

T.D. Beacham, K.D. Le, and J.R. Candy

95

A comparison of genetic variation between an anadromous steelhead (Oncorhynchus mykiss) population and seven derived populations sequestered in freshwater for 70 years

F. Thrower, C. Guthrie III, J. Nielsen, and J. Joyce

111

Genetic integrity and microgeographic population structure of westslope cutthroat trout (Oncorhynchus clarki lewisi) in the Pend Oreille Basin in Washington

S.F. Young, J.G. McLellan, and J.B. Shaklee

127

Microsatellite variation in populations of Atlantic salmon from North Europe

V. Wennevik, Ø. Skaala, S.F. Titov, I. Studyonov, and G. Nævdal

143

The rainbow smelt (Osmerus mordax) complex of Lake Utopia: Threatened or misunderstood?

R.A. Curry, S.L. Currie, L. Bernatchez, and R. Saint-Laurent

153

Genetics of populations: Marine species

Mitochondrial DNA variation in northwestern Bering Sea walleye pollock, Theragra chalcogramma (Pallas)

V.A. Brykov, N.E. Polyakova, T.F. Priima, and O.N. Katugin

167

Analysis of the genetic structure of northwestern Bering Sea walleye pollock Theragra chalcogramma

E.A. Shubina, M.N. Mel’nikova , A.I. Glubokov, and B.M. Mednikov

177

Genetic population structure of Pacific hake, Merluccius productus, in the Pacific Northwest

E. Iwamoto, M.J. Ford, and R.G. Gustafson

187

Population structure of Alaskan shortraker rockfish, Sebastes borealis, inferred from microsatellite variation

A.P. Matala, A.K. Gray, J. Heifetz, and A.J. Gharrett

201

Evidence for two highly differentiated herring groups at goose bank in the Barents Sea and the genetic relationship to Pacific herring (Clupea pallasi)

K.E. Jørstad

211

Sub-arctic populations of European lobster (Homarus gammarus) in northern Norway

K.E. Jørstad, P.A. Prodöhl, A-L. Agnalt, M. Hughes, A.P. Apostolidis, A. Triantaphyllidis, E. Farestveit, T.S. Kristiansen, J. Mercer, and T. Svåsand

223

Genetics of populations: Methods and applications

Detecting specific populations in mixtures

J.H. Reynolds and W.D. Templin

233

Sampling issues affecting accuracy of likelihood-based classification using genetical data

B. Guinand, K.T. Scribner, A. Topchy, K.S. Page, W. Punch, and M.K. Burnham-Curtis

245

Moderately and highly polymorphic microsatellites provide discordant estimates of population divergence in sockeye salmon Oncorhynchus nerka

J.B. Olsen, C. Habicht, and J.E Seeb

261

Forensic DNA analysis of Pacific salmonid samples for species and stock identification

R.E. Withler, J.R. Candy, T.D. Beacham, and K.M. Miller

275

Genetic variability: Fitness and adaptation

Outbreeding depression in hybrids between spatially separated pink salmon (Oncorhynchus gorbuscha) populations: Marine survival, homing ability, and variability in family size

S.E. Gilk, I.A. Wang, C.L. Hoover, W.W. Smoker, S.G. Taylor, A.K. Gray, and A.J. Gharrett

287

Effects on embryo development time and survival of intercrossing three geographically separate populations of Southeast Alaska coho salmon (Oncorhynchus kisutch)

K.L. Granath, W.W. Smoker, A.J. Gharrett, and J.J. Hard

299

Major histocompatibility complex loci are associated with susceptibility of Atlantic salmon to infectious hematopoietic necrosis virus

K.M. Miller, J.R. Winton,A.D. Schulze, M.K. Purcell, and T. J. Ming

307

Quantitative trait loci analyses for meristic traits in Oncorhynchus mykiss

K.M. Nichols, P.A. Wheeler, and G.H. Thorgaard

317

Genetic variability: Phenotype and maintenance of variation

The mating system of steelhead, Oncorhynchus mykiss, inferred by molecular analysis of parents and progeny

T.R. Seamons, P. Bentzen, and T.P. Quinn

333

Polygamous mating and high levels of genetic variation in lingcod (Ophiodonelongatus) of the Strait of Georgia, British Columbia

R.E. Withler, J.R. King, J.B. Marliave, B. Beaith, S. Li, K.J. Supernault, and K.M. Miller

345

Aquaculture genetics: Interactions of cultured and wild fish

Differential reproductive success of sympatric,naturally spawning hatchery and wild steelhead (Oncorhynchus mykiss)

J.E. McLean, P. Bentzen, and T.P. Quinn

359

Genetic variation within and between domesticated chinook salmon (Oncorhynchus tshawytscha) strains and their progenitor populations

J.E. Kim, R.E. Withler, C. Ritland, and K.M. Cheng

371

Lopsided fish in the Snake River Basin: Fluctuating asymmetry as a way of assessing impact of hatchery supplementation in chinook salmon (Oncorhynchus tshawytscha)

O. Johnson, K. Neely, and R. Waples

379

Temporal comparisons of genetic diversity in Lake Michigan steelhead (Oncorhynchus mykiss) populations: Effects of hatchery supplementation

M.L. Bartron and K.T. Scribner

395

Aquaculture genetic: Applications

Genetic selection and molecular analysis of domesticated rainbow trout for enhanced growth on alternative diet sources

K. Overturf, D. Bullock, S. LaPatra, and R. Hardy

409

Improvement of sperm motility of sex-reversed male rainbow trout (Oncorhynchus mykiss) by incubation in high-pH artificial seminal plasma

T. Kobayashi, S. Fushiki, and K. Ueno

419

Temporal and spatial occurrence of female chinook salmon carrying a male-specific genetic marker in the Columbia River watershed

T.R. Chowen and J.J. Nagler

427

Phylogenetics

Molecular systematics and evolution of the growth hormone introns in the Salmoninae

R.B. Phillips, M.P. Matsuoka, N.R. Konkol, and S. McKay

433

Karyological differentiation of northern Dolly Varden and sympatric chars of the genus Salvelinus in northeastern Russia

S.V. Frolov and V.N. Frolova

441

Differences between two subspecies of Dolly Varden (Salvelinus malma) reveal by RFLP-PCR-analysis of mitochondrial DNA

A.G. Oleynik, L.A. Skurikhina, S.V. Frolov, V.A. Brykov, and I.A. Chereshnev

449

Use of microsatellite locus flanking regions for phylogenetic analysis? A preliminary study of Sebastes subgenera

T.A. Asahida, A.K. Gray, and A.J. Gharrett

461

Authors' index

471

Genetics of Subpolar Fish and Invertebrates | Marine Research Catalog
Alaska Sea Grant publications